Protein Info for RR42_RS15995 in Cupriavidus basilensis FW507-4G11

Annotation: 4Fe-4S ferredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 723 PF00037: Fer4" amino acids 214 to 235 (22 residues), 27.8 bits, see alignment (E = 9.4e-10) amino acids 366 to 388 (23 residues), 29.4 bits, see alignment (E = 3.1e-10) amino acids 586 to 607 (22 residues), 25 bits, see alignment (E = 7.6e-09) amino acids 622 to 639 (18 residues), 23.3 bits, see alignment (E = 2.7e-08) PF13237: Fer4_10" amino acids 214 to 255 (42 residues), 25 bits, see alignment 9.6e-09 PF12800: Fer4_4" amino acids 217 to 231 (15 residues), 19.1 bits, see alignment (E = 7.7e-07) amino acids 369 to 385 (17 residues), 17.8 bits, see alignment (E = 2e-06) amino acids 590 to 604 (15 residues), 13.2 bits, see alignment (E = 6.3e-05) amino acids 622 to 635 (14 residues), 13.5 bits, see alignment (E = 4.8e-05) PF12798: Fer4_3" amino acids 219 to 233 (15 residues), 15 bits, see alignment (E = 2.2e-05) amino acids 372 to 386 (15 residues), 16.4 bits, see alignment (E = 8.3e-06) amino acids 623 to 637 (15 residues), 15.4 bits, see alignment (E = 1.7e-05) PF12838: Fer4_7" amino acids 340 to 386 (47 residues), 36.1 bits, see alignment 4.4e-12 amino acids 591 to 637 (47 residues), 30.7 bits, see alignment 2.1e-10 PF13187: Fer4_9" amino acids 340 to 387 (48 residues), 28.6 bits, see alignment 7.1e-10 amino acids 591 to 638 (48 residues), 33.4 bits, see alignment 2.2e-11 PF12837: Fer4_6" amino acids 365 to 387 (23 residues), 27.7 bits, see alignment (E = 1.2e-09)

Best Hits

KEGG orthology group: None (inferred from 74% identity to rme:Rmet_2764)

Predicted SEED Role

"Iron-sulfur cluster-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y5H4 at UniProt or InterPro

Protein Sequence (723 amino acids)

>RR42_RS15995 4Fe-4S ferredoxin (Cupriavidus basilensis FW507-4G11)
MPTLICNCNDTMPLDGAALSGNVPVPAGGVKTPLKVHRLLCRREIGDFTAALAGTDDVIV
ACTQERALFTEVAARRQAEGTMTAPVRFVNIRETGGWSQGARRDPKTANAKIAALLAAAA
LPDPDPVPVVDYRSGGAVLVLGPADRAIPWAGKLAEAGLDVAVLLSAAAGAMAPAGLPAS
RAFPVHSGKLVKLGGWLGAFEASWETGAGRSNPIDLDLCTRCNACIDACPEDAIDFSYQV
DLDRCRSHRACVKACGAAAAIDFDRPAAIATERFDLVFDLADTPAFRMHAPPQGYLYAGA
DALRQQAQALTLVQLVGEFEKPKFFQYKEKLCAHGRNQTTGCTACIDICSTEAIHSQWHD
GRGRIEVTPNLCMGCGACTTVCPSGAISYAYPKPDHLGERLRTLLSAYRAAGGRDAALLL
HGEEHGNAPILALGRAARAGQAHGMPPNVIPVGLFHPAACGLELWLAAICWGAGRVAVML
TGDEAPQYRTALAAQVAVGQAILAGLGYDGECLSLVDGPDAATLDAQLSALAAPGSNRPA
APPAAFHAAAAKRETLDFALDHLVRNAPRPAASVALPAGAPLGAVAVDTGRCTLCMACVG
ACPAQALRDNPERPVLGLLERNCVQCGLCEKTCPEDAITLVPRLLTGEQARRTVTLAETQ
PFHCIRCAKPFGTAQMVHTMLARLGSHPAFAGEAAERLKMCGDCRVVDMMEKNSGEASGN
ALQ