Protein Info for RR42_RS15935 in Cupriavidus basilensis FW507-4G11

Annotation: C4-dicarboxylate ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 582 transmembrane" amino acids 12 to 46 (35 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details amino acids 106 to 135 (30 residues), see Phobius details amino acids 147 to 171 (25 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 237 to 259 (23 residues), see Phobius details amino acids 265 to 282 (18 residues), see Phobius details amino acids 290 to 310 (21 residues), see Phobius details amino acids 318 to 338 (21 residues), see Phobius details amino acids 351 to 370 (20 residues), see Phobius details amino acids 389 to 408 (20 residues), see Phobius details amino acids 413 to 434 (22 residues), see Phobius details amino acids 448 to 476 (29 residues), see Phobius details amino acids 489 to 513 (25 residues), see Phobius details PF06808: DctM" amino acids 12 to 308 (297 residues), 164.9 bits, see alignment E=1.4e-52 amino acids 324 to 512 (189 residues), 101.8 bits, see alignment E=2e-33

Best Hits

KEGG orthology group: None (inferred from 88% identity to cti:RALTA_A2409)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YF70 at UniProt or InterPro

Protein Sequence (582 amino acids)

>RR42_RS15935 C4-dicarboxylate ABC transporter (Cupriavidus basilensis FW507-4G11)
MIPLEYMPPLMFGGLVVFMLIGFPVAFSLSAVGLAFGILAIQFGYFPVSFLQAVPSRVFG
SVLANELLLAIPFFTFMGAILEKCGLAEDMLDSMGQLFGPVRGGLGYSVIIVGFILGAIT
GTVAAQVIAMAMISLPVMMRYRYNMKYATGVLAASGTITQLVPPSLVLVVLADQLKTPMG
SADVGSMYLGAWGPSVIQIALFALYTFVLTRIKPDWLPPVPVEERTLRGWPLWRKCLRGI
IPCAVLIFLVLGTIMLGIATPTESGAMGAVGALVLAVLRDPGFGKLDRNIYRIGLAATGV
AIIAGTVAFGSHAFRIPLALVYLVITWLLLRAGQLTALRGLIIEAYQSTARITAMVVFIL
IGSTCFSVVFQGVDGGAWVEHMFTSLPGGWIGFLLVVNLFIFFLAFFLDFFEIAFIVVPM
LAPVAVKVLAPVVADSMGGNPEAAATAALVWFGVMLCVNMQTSFMHPPFGFALFYLRGIA
PKEVKSSDIYWGALPWVGLQMIMVVLVMFWPGLVTMFLDKGSLHHSNAAEVTIPLGGESP
GGAASVPAPVPGGRSEPGTLELPAAPADSEPATPQFEFDKKK