Protein Info for RR42_RS15785 in Cupriavidus basilensis FW507-4G11

Annotation: glycosyl transferase family 28

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 TIGR03590: UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase" amino acids 1 to 299 (299 residues), 320.4 bits, see alignment E=6e-100 PF04101: Glyco_tran_28_C" amino acids 196 to 341 (146 residues), 37.5 bits, see alignment E=1.3e-13

Best Hits

KEGG orthology group: None (inferred from 70% identity to rpf:Rpic12D_0585)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YF18 at UniProt or InterPro

Protein Sequence (361 amino acids)

>RR42_RS15785 glycosyl transferase family 28 (Cupriavidus basilensis FW507-4G11)
MKVAIRADASVQIGSGHVMRCLTLADDLRERGAEVRFITRAHPGGAQALIAKRGYACHLL
PAPQPGGSVMGDLAHSAWLGVPWEDDLARSAAVLADWSPQWLVVDHYGLDWRWEQPLRGQ
VPRILAIDDLADRRHDCDLLLDQNYYSDLDQRYAALVPPHCTCLLGPGYALLRPEFTVAG
QALHRGTGPVRRVLLFMGGMDQDNATSIALRGLQDFAKAGIAIDVVLGAGAPHRDQVRTL
CESTPNTRLHVQVDNMAELMASADLAIGACGSATWERCFLGLPTIAIVLADNQRRSAHDL
AAAGYIVNLGEVAQVTPEKVAQAVAALTADDAGRVAMSRRALGLARREPRTVADLIYEGT
R