Protein Info for RR42_RS15175 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 41 to 60 (20 residues), see Phobius details amino acids 79 to 109 (31 residues), see Phobius details amino acids 120 to 140 (21 residues), see Phobius details PF07331: TctB" amino acids 10 to 145 (136 residues), 80.1 bits, see alignment E=8.8e-27

Best Hits

KEGG orthology group: None (inferred from 91% identity to reu:Reut_A0845)

Predicted SEED Role

"Tricarboxylate transport protein TctB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YC03 at UniProt or InterPro

Protein Sequence (153 amino acids)

>RR42_RS15175 membrane protein (Cupriavidus basilensis FW507-4G11)
MRIRSQKDFASGLMFILVGFSFSWVARGYSMGTAAKMGPGYFPFWLGIVLALLGALVLWS
SLSAKKEEDQLARWDIKTLLWILGSVVLFGLMLKPLGMVLSVLVLVLVSSMASHEFSWKG
AVVNAIVLVIISLGAFVYGINLQMPVWPAFLAG