Protein Info for RR42_RS15160 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 42 to 65 (24 residues), see Phobius details amino acids 78 to 100 (23 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details PF09980: DUF2214" amino acids 4 to 149 (146 residues), 177 bits, see alignment E=1.1e-56

Best Hits

KEGG orthology group: K08983, putative membrane protein (inferred from 78% identity to reu:Reut_A0848)

Predicted SEED Role

"putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YC67 at UniProt or InterPro

Protein Sequence (151 amino acids)

>RR42_RS15160 membrane protein (Cupriavidus basilensis FW507-4G11)
MLTDALLAFLHYTFIFLLIALMTAEAVVLRPGMTPPVLKRLSIYDLLYFLTAMAVLASGL
LRLFYGAKGAQFYLHNPWFHAKITVFVVIALCSLPPTFAIRRWRRQARSLPDFVPMPAEL
KSARRWVMIQAHLLILLPLCAVMMARGVGMK