Protein Info for RR42_RS14375 in Cupriavidus basilensis FW507-4G11

Annotation: pilus assembly protein FimV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 960 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 534 to 553 (20 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 236 to 308 (73 residues), 87.1 bits, see alignment 5.3e-29 TIGR03504: FimV C-terminal domain" amino acids 916 to 957 (42 residues), 62.1 bits, see alignment (E = 3.9e-21)

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 74% identity to reh:H16_A2617)

Predicted SEED Role

"Tfp pilus assembly protein FimV"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YBQ0 at UniProt or InterPro

Protein Sequence (960 amino acids)

>RR42_RS14375 pilus assembly protein FimV (Cupriavidus basilensis FW507-4G11)
MSVSQHRRKDAPTARQRWSTLAFTALGLLLAQPAAYAAGFGQLRVQSNLGQPLQAEIDIS
GVSAEEADGLAVKLASPDAYAKAGLTYLPAVSSLRLQVERRPNGSYVARVRSTQPVSEPF
VDILVDMTWASGKVSRAYTFLLDPAGAKPSNQTFSPATVVQAGTPDESGATSPAAPAPSA
APVPAPSVQAPTPAAASPAPRPQAKAPAPRPHRAATQAVADGAAAAGGTYTVQRGDNLSA
IAGEASQGQDSVSLDQMLVALYRNNPNAFVGGNMNRLKAGAVLKVPSQQEAQSVTPRAAR
REVVARTQGFDAYRSRLATAAAGRSVEAGSGREQSGNVTARVQEQAAPAAGPRDELKLSK
PDRGSQAAAAAATEANIAKERQLKEAEARLAQLEKNVNDMQRLVELKNAEIAKLAQVQKG
AGKDSAAAPAAPAAAPAVVPAEAAKADAAAPAPATASATAAAAAAAAPLAASPASAPAAP
AGASSAGANAADATVAAAAKPAAASTPAAKRPPVVTQPAPVAQPSFIEDLLANPMLLPGG
GLLIALLGGYAIYRRRQQQKTSDGAAFGDSILSQESTVMAGGNSLFGTAGGQSVDTSQHS
VFGADFRIGNNAAEANEVDPIAEADVYIAYGRDVQAEEILREALQQNPERQAIRLKLMEI
YNTRQDVEGFRVIAEEMFAQTGGHGAEWTQAAEMGRSLDPNNALYLSVAPDVASVDTTTL
PADQWRTHDPSQDLAAAPRETPLADLADFALPLDGFPAPAAGAPITAPESASRVFGNGEA
VPSALAARLDDGLGLDLPETHGIGGHDGHDGHGDIPALDTPTRSRPLDFDMSGISLDLSP
AGHADARADSPAQAHEETRSSFGSSLPAPTMLRDGKLSEPIDLSRVSAESGLDTARGISP
STLSADSADGGRDMQIKFDLARAYIEIGDKEGARELLQEVVEQSQDPLLTEAKTLLRDVA