Protein Info for RR42_RS13790 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 PF00005: ABC_tran" amino acids 20 to 158 (139 residues), 96.2 bits, see alignment E=4.3e-31 PF08402: TOBE_2" amino acids 270 to 341 (72 residues), 22.5 bits, see alignment E=1.5e-08

Best Hits

Swiss-Prot: 35% identical to UGPC_SALTI: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Salmonella typhi

KEGG orthology group: K02023, multiple sugar transport system ATP-binding protein (inferred from 80% identity to reu:Reut_A2209)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YDN6 at UniProt or InterPro

Protein Sequence (366 amino acids)

>RR42_RS13790 ABC transporter (Cupriavidus basilensis FW507-4G11)
MQLRLEGIAQQAGSQAYLYPMSLTPVPGAVTILLGATQAGKTSLMRVMAGLDRPSAGRVE
VDGIDVTGMPVRERNVSMVYQQFINYPSMTVFDNIASPLKLRRSRDIDGQVRALATRLHI
EHLLERFPAELSGGQQQRVALARALAKGAPLMLLDEPLVNLDYKLREELREELTQLFAHG
NATVIYATTEPAEALLLGGYTAVLDAGELLQYGPTPEVFHYPASLRVARAFSDPPMNLMA
GNLLAGAVTLPGGVVVPLPGAVEQGGTVTVGVRAGALRLDAVPGSVPVAGRVALAELSGS
DTFVHMDSPVGNLVAQFPGVVDLELGAPLTLHLDPAQLYLFDADGMRIHAPSRPLKVAPA
TAELGA