Protein Info for RR42_RS13385 in Cupriavidus basilensis FW507-4G11

Annotation: peptide ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 626 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details PF00496: SBP_bac_5" amino acids 119 to 529 (411 residues), 251.1 bits, see alignment E=9.5e-79

Best Hits

KEGG orthology group: K13893, microcin C transport system substrate-binding protein (inferred from 84% identity to reu:Reut_A2129)

Predicted SEED Role

"ABC transporter, periplasmic substrate-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y464 at UniProt or InterPro

Protein Sequence (626 amino acids)

>RR42_RS13385 peptide ABC transporter substrate-binding protein (Cupriavidus basilensis FW507-4G11)
MHIRARRPLQAAWQRFRTFAALGCGFVALCTAGFPLSAGAAHGFAQYGGLKYPADFTHFD
YANPDAPRGGTLTLANPDRRTSFDKFNPFTLKGTSAPGVNTLMFESLLIASSDETASAYG
LLADDVTVAPDELSVTFHIRPQARFSNGDPVLASDVKYSYDMLMSKASSPGYRSMCTDVK
AVTVVDSRTVRFDFRQRNIELPLIVGSLPVFSRKWTATVSFDKLTFEDPVASGPYLIERY
DAGRGITFKRDPSYWGKDLAVRRGTFNFDRVVYRLYKDETAKLEAFKAGEFDAIVEYKAK
SWAKSYEGKRFSNGELIKTDFPHRNGAGMQGFVMNMRKPMFQDVRVRQALILALDFEWLN
RQLFYGAYRRLDSWFSNSELAASATFDGRPGPGELELLEPLRAQLAPEVFGPIVAMPTTN
PPRSLRDNLRDARRLLAQAGWTFEDGALRNAKGEPFVFEFLDDGGAMSRVITTYVRNLEK
LGIEVNQRTTDFALYQKRLEDFDFDMVSIRFPDSQSPGNELRDRFNSEAAGTPGSDNLFG
LKSPAIDRLVDNVLHAHTREELVNAGRALDRVLMHGYYIVPNWYSASHRVAYRKELVYPQ
RLPYYYTAEGWILSNWWRADAKPAAQ