Protein Info for RR42_RS13295 in Cupriavidus basilensis FW507-4G11

Annotation: ATP-dependent exonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1205 PF00580: UvrD-helicase" amino acids 19 to 473 (455 residues), 154.6 bits, see alignment E=1.4e-48 PF13245: AAA_19" amino acids 26 to 78 (53 residues), 31.5 bits, see alignment (E = 5.6e-11) PF13361: UvrD_C" amino acids 789 to 932 (144 residues), 41.2 bits, see alignment E=4.5e-14 PF12705: PDDEXK_1" amino acids 1033 to 1173 (141 residues), 26 bits, see alignment E=2.7e-09

Best Hits

KEGG orthology group: None (inferred from 77% identity to cti:RALTA_A1937)

Predicted SEED Role

"ATP-dependent DNA helicase pcrA (EC 3.6.1.-)" in subsystem DNA repair, bacterial UvrD and related helicases (EC 3.6.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.-

Use Curated BLAST to search for 3.6.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YB08 at UniProt or InterPro

Protein Sequence (1205 amino acids)

>RR42_RS13295 ATP-dependent exonuclease (Cupriavidus basilensis FW507-4G11)
MSIHAYLRDGQPVAEAEFTRAACDPASSVVVEACAGSGKTWLLVARLLRLLLAGAAPHEI
LAITFTRKAAEEMRERLLEVLAQLARDDDDAVIAALTQRGLSPDAARAALPRARGLHAQV
LAAPGRMAIDTFHGWFGTLLRGAPLASGIVPGATLREDALRMKREAWAPFWQALATPPYA
NLRAAFERLVDAIGEFQARALLDAMFHARSEWFAFRESADPAEALAADLGEDAQVDVLLD
VLADDGWLDACQGLASQLGRGGKTEQAHATRLADAILAIRAWREAGAEGGEPAERTFAIL
RDAFFTAAGKPRSLRATTALTKALGGEAMVDAFLAEHGDMCAALEQVAQRRCEAAVLAVN
LALYELGDALLTRYQHHKSEQRAMDFADLEWLAARLMRDEETATYLQVRLDARYRHLLLD
EFQDTNPLQWRILQGWLAGYAGLGERPTVFLVGDPKQSIYRFRRADARLFQAAGEMLQSG
FGATVLRTNRTRRNRPEVLDWVNAVFDTARADGRYALFETQTTALDEPGGPVWLLPLVEP
EAEPAPQDDAASDDDTAARDPATHRDTLTQPRQHEGDSLRLEEGRRVAAWLKHVRATVPV
ADSDGPRPARWSDVHLLVRRKTHLAEYERAFREAGIPCLSPRRGGLLATLEALDLSALLA
FLMTPESDLDLAHVLKSPLVGATDEDLIAIAQMAQAREPRPGWWACLREQGLPEFGSPAL
RDGVARLRHWLEVAPHRPVHDLIDHIYHGGEVRRRYAEAAPAEIRDQVLANLDAFLKLSL
DLDGGRYPSLPKFIDELQEIRRGEEGESPDEGGMADSAEDAQGEADADDATDNALDAVHI
LTVHAAKGLEAPFVVLLDANHSDAAADRSGILIDWPPSSAVPVHFSAYGKRSTRGLARAP
LFEAEAALAERENWNLLYVAMTRARQGLLVSGVKGRASRSADSAEGNREIAGSWYARLLA
AGVGAEVEPFPAATAQDVADAAASHDARVRFTDFRQRYREAAESLAPVLAWEDEEAEQGA
ATGEDGDHTIVFDADAARHGELLHALLERVTRYPEAFEGLPTPEVVMRWFPLAGAGTAQA
RTLWREQAHAAVEGARLMLEAPALRPLLFPQGALSARNEVELYDARGRLLRIDRLVEFAD
RVVIIDYKLRLLPQEHAAYAQQLAGYVAAVRPMFPGRRVEAGVATADGEWIAADALQTSR
QGTLF