Protein Info for RR42_RS12895 in Cupriavidus basilensis FW507-4G11

Annotation: cytochrome oxidase subunit III

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details TIGR00782: cytochrome c oxidase, cbb3-type, subunit III" amino acids 37 to 298 (262 residues), 284.6 bits, see alignment E=4.3e-89 PF14715: FixP_N" amino acids 42 to 87 (46 residues), 83.9 bits, see alignment 7.5e-28 PF13442: Cytochrome_CBB3" amino acids 133 to 205 (73 residues), 49 bits, see alignment E=9.8e-17 amino acids 218 to 293 (76 residues), 45 bits, see alignment E=1.7e-15 PF00034: Cytochrom_C" amino acids 134 to 193 (60 residues), 29.2 bits, see alignment E=2.9e-10 amino acids 219 to 296 (78 residues), 27.8 bits, see alignment E=8.2e-10

Best Hits

Swiss-Prot: 49% identical to CCOP_RUBGE: Cbb3-type cytochrome c oxidase subunit CcoP (ccoP) from Rubrivivax gelatinosus

KEGG orthology group: K00406, cb-type cytochrome c oxidase subunit III [EC: 1.9.3.1] (inferred from 87% identity to reu:Reut_A2038)

Predicted SEED Role

"Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)" in subsystem Terminal cytochrome C oxidases (EC 1.9.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.9.3.1

Use Curated BLAST to search for 1.9.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YAN4 at UniProt or InterPro

Protein Sequence (308 amino acids)

>RR42_RS12895 cytochrome oxidase subunit III (Cupriavidus basilensis FW507-4G11)
MSDFFTDFWSYYIAAIALVGIVWCVWLLFSQRKVTKVVGAPEDTGHVWDGDLRELNNPLP
RWWMWMFLLACIFGLGYLVLYPGLGSYAGVLKTSSRVELEAHRQAAEQLQREVYGKYMQM
DVKQVAAEPAAREIGQRLFLNYCAQCHGSDARGSRGFPNLTDNDWLYGGDPETITQTITK
GRNGVMPSFASTIDGKLAGDVAQYVRSLSGLSSDPIRASRGESTFKSTCAACHGSTGKGN
QALGAPNLSDRVWLYGSSEANIVDAILKGHNNHMPAHEEILTPERIRMLTAYVWGLSNIG
GAGEGGKQ