Protein Info for RR42_RS12480 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 47 to 73 (27 residues), see Phobius details amino acids 84 to 104 (21 residues), see Phobius details amino acids 110 to 134 (25 residues), see Phobius details amino acids 150 to 169 (20 residues), see Phobius details amino acids 195 to 214 (20 residues), see Phobius details amino acids 241 to 265 (25 residues), see Phobius details amino acids 277 to 305 (29 residues), see Phobius details amino acids 313 to 333 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 52 to 330 (279 residues), 109.9 bits, see alignment E=6.5e-36

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 87% identity to reh:H16_A2254)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YAF9 at UniProt or InterPro

Protein Sequence (343 amino acids)

>RR42_RS12480 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MASTSSLPTTPATPANLPKVRLDWTPLALAPLLMLLAYPLIGSGSTWLTLTIAGLAMGMI
VFVVSSGLTLVFGLMDVLNFGHGAFIALGAYVAASVLLPLGAWVEADSLWLNLAVFGLAI
LAAMAAAGVIGFLFERIVVRPVYGQHLKQILITMGGMIVAEQLIKAIWGAETIALQVPTT
FRGAVLLGDAAIEKYRLIAVVLGLVIFISMVLVLNRTRIGLLIRAGVENREMVESLGYRI
RLLFIGVFVVGAGLAGMGGVLWGLYQQNITASIGAQVNVLIFIVIIIGGLGSTTGCFVGA
LLVGLMANYTGFLFPKVALFSNILLMVMILLWRPQGLYPVAKR