Protein Info for RR42_RS12475 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 39 to 59 (21 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 91 to 114 (24 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 227 to 252 (26 residues), see Phobius details amino acids 269 to 294 (26 residues), see Phobius details amino acids 301 to 318 (18 residues), see Phobius details amino acids 324 to 344 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 39 to 304 (266 residues), 120.5 bits, see alignment E=3.9e-39

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 89% identity to reh:H16_A2253)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y3T0 at UniProt or InterPro

Protein Sequence (358 amino acids)

>RR42_RS12475 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MTRLLSGDLPRSRVLTVILVAMLLALACAPFLFPGARALNMAAKICIFVVLVASYDLLLG
YTGIVSFAHTMFFGIGGYGVAIAMSRLEPGWGALALGTLGALLVSMLLAFLIGLFSLRVR
AIFFAMITLAVATAFATLVSQLSEWTGGEDGISFKVPEVFTPGFSLGDAEWLGVPLNGKL
FSYYFVFASALVLFLLLLRVVNSPFGRVLQAIRENDFRAEAIGYRTVVYRTVSTVLSAGF
ATLAGVLMALWLRYNGPDTSLSFEIMVDILLIVVIGGMGTLYGALIGTTLFLVAQTYLQD
VMKLASDATAAIPLLSGLLHPDRWLLWLGLLFILSVYYFPQGIVGRLRGDRAEHEVAS