Protein Info for RR42_RS12285 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 77 to 100 (24 residues), see Phobius details amino acids 113 to 132 (20 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 183 to 209 (27 residues), see Phobius details amino acids 228 to 251 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 90 to 257 (168 residues), 104.8 bits, see alignment E=2.3e-34

Best Hits

Swiss-Prot: 68% identical to SSUC_ECOLI: Putative aliphatic sulfonates transport permease protein SsuC (ssuC) from Escherichia coli (strain K12)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 84% identity to rme:Rmet_1372)

MetaCyc: 68% identical to aliphatic sulfonate ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-56-RXN [EC: 7.6.2.14]

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YAB7 at UniProt or InterPro

Protein Sequence (269 amino acids)

>RR42_RS12285 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MSAPLTLPARNPDWLRHAARSAAPWIVPVLLVAAWQLASQLGWLSNRILPAPLDVVKAAW
GLSVTGELWRHVWVSTWRAVLGFTIGGGFGLALGLLTGTFRPAATLLDSTLQMVRNIPPL
ALIPLVILWFGIDETAKLFLVSLGVFFPIYLNTYHGIRAVDPGLIEMAKSYGLSGWRLYR
EVILPGALPNILVGVRFSLGLMWVILIVAETISAQSGIGYMTMNAREFLQTDVVLVGILL
YALLGKLADLLSRGLERFWLRWHPGYQAH