Protein Info for RR42_RS12245 in Cupriavidus basilensis FW507-4G11

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 PF00126: HTH_1" amino acids 4 to 64 (61 residues), 53 bits, see alignment E=2.6e-18 PF03466: LysR_substrate" amino acids 89 to 294 (206 residues), 157.2 bits, see alignment E=3.9e-50

Best Hits

Swiss-Prot: 57% identical to SSUR_BURCJ: HTH-type transcriptional regulator SsuR (ssuR) from Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)

KEGG orthology group: K13635, LysR family transcriptional regulator, cys regulon transcriptional activator (inferred from 94% identity to rme:Rmet_1379)

MetaCyc: 48% identical to DNA-binding transcriptional dual regulator CysB (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"Alkanesulfonate utilization operon LysR-family regulator CbI" in subsystem DNA-binding regulatory proteins, strays

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YA82 at UniProt or InterPro

Protein Sequence (315 amino acids)

>RR42_RS12245 transcriptional regulator (Cupriavidus basilensis FW507-4G11)
MNFQQLRSIREAVRRQFNLTEVANALYTSQPGVSRQIRELEEELGVEIFERYGKRLTGLT
EPGREIVRIVERLLLEAENLRQAGDEFAGRHTGRLTVATTHTQARYALPKVVQSFRRTYP
HVTLALQEASPAHIVELVLSGQADIGIATEAVASEAGLTSFEAYTWRHVLVVSPDHPLTH
LPEPTLEDIAAFPIITYDAGFTGRRKIDDAFAAAGLQPEIVLTAMDADVIKTYAELELGV
GIIASMAYDERKDAGLVRIAADHLFEPNTTSVAVRRGAYLRGYAHAFINMFAPHLSRDTV
SSALSEPAGGQVVEA