Protein Info for RR42_RS12235 in Cupriavidus basilensis FW507-4G11

Annotation: terminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 122 transmembrane" amino acids 26 to 45 (20 residues), see Phobius details amino acids 51 to 69 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 78% identity to reh:H16_A2235)

Predicted SEED Role

"Phage terminase, small subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YAA7 at UniProt or InterPro

Protein Sequence (122 amino acids)

>RR42_RS12235 terminase (Cupriavidus basilensis FW507-4G11)
MSARPQGLLSWQWHGYARNHNHPRSLLLHIVAVPMFMAGNVLLAYGVLSLSVPAVGLGVL
CMALSMMLQGRGHRLEAVRPEPFAGPLDVAQRILAEQWITFPRYVLSGQWWAALHGHGAN
PA