Protein Info for RR42_RS11780 in Cupriavidus basilensis FW507-4G11

Annotation: stomatin 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01145: Band_7" amino acids 26 to 197 (172 residues), 122 bits, see alignment E=2.9e-39 PF16200: Band_7_C" amino acids 246 to 307 (62 residues), 92.8 bits, see alignment E=1.1e-30

Best Hits

Swiss-Prot: 49% identical to YH77_SCHPO: Uncharacterized protein C16G5.07c (SPBC16G5.07c) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 90% identity to reh:H16_A2036)

Predicted SEED Role

"Putative stomatin/prohibitin-family membrane protease subunit YbbK" in subsystem YbbK

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YGH2 at UniProt or InterPro

Protein Sequence (310 amino acids)

>RR42_RS11780 stomatin 2 (Cupriavidus basilensis FW507-4G11)
MFEFFGSLLPLLILVAVIVLVAQSFKIVPQQHAWVLERLGKYRATLTPGLTVVLPFIDRV
AYKHVLKEIPLDVPSQICITKDNTQLQVDGVLYFQVTDPMKASYGSSNFVVAITQLSQTT
LRSVIGKLELDKTFEEREYINHSVVNALDEAAASWGVKVLRYEIKDLTPPKEILHAMQAQ
ITAEREKRALIAASEGKRQEQINLATGAREAAIQKSEGERQAAINRAQGEASAILAVAEA
NAQAIEKIGHAIRTDGGMEAVNLKVAEEYVSAFGNLAKQGNTLIVPGNLGDMSTMVASAL
QIVKGQQKGA