Protein Info for RR42_RS10880 in Cupriavidus basilensis FW507-4G11

Annotation: ankyrin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF12796: Ank_2" amino acids 29 to 117 (89 residues), 40.9 bits, see alignment E=6.4e-14 amino acids 63 to 149 (87 residues), 66.4 bits, see alignment E=7e-22 amino acids 149 to 206 (58 residues), 40.8 bits, see alignment E=7e-14 PF13637: Ank_4" amino acids 97 to 141 (45 residues), 30.8 bits, see alignment 7.2e-11 amino acids 155 to 202 (48 residues), 28.1 bits, see alignment 5e-10 PF00023: Ank" amino acids 121 to 149 (29 residues), 34 bits, see alignment 5.9e-12 amino acids 153 to 184 (32 residues), 35.2 bits, see alignment 2.5e-12 PF13606: Ank_3" amino acids 121 to 148 (28 residues), 30.3 bits, see alignment (E = 7.4e-11) amino acids 153 to 179 (27 residues), 20.4 bits, see alignment (E = 1.3e-07) PF13857: Ank_5" amino acids 150 to 194 (45 residues), 29.2 bits, see alignment 2.4e-10

Best Hits

KEGG orthology group: K06867, (no description) (inferred from 78% identity to reh:H16_A1574)

Predicted SEED Role

"FOG: Ankyrin repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YFX0 at UniProt or InterPro

Protein Sequence (229 amino acids)

>RR42_RS10880 ankyrin (Cupriavidus basilensis FW507-4G11)
MNTVRRLAAVAAMLVSAVAWAAPVDDMRHAVEFDDVKAAQKMLARGVDPNLVDAKGNPML
VVALREKSLKVAQALIRAKDIDFDKTNAAGETPLMMASLQNELDLVKLMVDQMEVEINKT
GWTPLHYAATNGNNEIVKFLVDHAAYIDAESPNGSTPLMMAARGGHIETVKLLLDEGADM
RLKNQQGMTVIDFAERYHQKEIAEGLKSRWQKLYPQTPLSAQPPQKGWN