Protein Info for RR42_RS10115 in Cupriavidus basilensis FW507-4G11

Annotation: glycosyl transferase family 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 TIGR04348: putative glycosyltransferase, TIGR04348 family" amino acids 8 to 325 (318 residues), 437.6 bits, see alignment E=1.1e-135 PF00534: Glycos_transf_1" amino acids 148 to 303 (156 residues), 45.9 bits, see alignment E=4.9e-16 PF13692: Glyco_trans_1_4" amino acids 151 to 290 (140 residues), 39.1 bits, see alignment E=9.4e-14

Best Hits

KEGG orthology group: None (inferred from 72% identity to reh:H16_B0296)

Predicted SEED Role

"Glycosyl transferase, group 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YFA9 at UniProt or InterPro

Protein Sequence (335 amino acids)

>RR42_RS10115 glycosyl transferase family 1 (Cupriavidus basilensis FW507-4G11)
MRPPKTTVAIISPALRKANNGNWQTAYRWSRFLRAACEVSLETEWSPADHPGKPPACMIA
LHARRSADTVGRFAKACPGSPLVVVLTGTDLYRDIRTDECAQRSLDLATHLVVLQEEGPA
ELASHHRTKCRVIYQSAPALTPGTPNQRTFDVVLVGHMRAEKDPLTPMRALEWLPDDSPV
RLIHIGDALENEYLRAAQALQARAWPTVGRYLWQAGLPHHDTRQRIRRAQAMVISSVIEG
GANVIIEAVTAGVPVLASRIPGNIGMLGRDYNGYFAPGDCRELARLLDRASRDPAFLSLL
QRQCARRAPLFAPAREQAEVIRLVTDALSRPDTLQ