Protein Info for RR42_RS09605 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 PF00582: Usp" amino acids 3 to 146 (144 residues), 29.9 bits, see alignment E=3.7e-11 amino acids 158 to 276 (119 residues), 39.1 bits, see alignment E=5.5e-14

Best Hits

Predicted SEED Role

"Universal stress protein UspA and related nucleotide-binding proteins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y8M2 at UniProt or InterPro

Protein Sequence (278 amino acids)

>RR42_RS09605 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MDYRTVLVALGADPDCASRVRMAADLAASFGAHVTGVSATGLRLDPVRGVGDDVARHMAA
SRGRLLSQATLQGEILHSTMAAHAPGVPFSHRVVEEETGWVLAQEARVADLAVMARPVAT
QEVPSLGAGAAEYVLLNAGRPVLLVPQAFRRLHGGHMAIAWDGQREAARAVADAMPLLLR
ASHVTIIGVWDDRGEPRADSEPVAGLRHYLQRHGIVAGVRNVQQAGPVAARLLDAVGALG
ADMLVAGGYGHSRMRELIMGGTTRTLMHHAPVPLLLSH