Protein Info for RR42_RS09400 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 25 to 46 (22 residues), see Phobius details amino acids 64 to 86 (23 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 130 to 155 (26 residues), see Phobius details amino acids 168 to 188 (21 residues), see Phobius details amino acids 202 to 226 (25 residues), see Phobius details amino acids 240 to 262 (23 residues), see Phobius details amino acids 282 to 303 (22 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details amino acids 357 to 377 (21 residues), see Phobius details

Best Hits

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 58% identity to ppd:Ppro_1042)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y2D1 at UniProt or InterPro

Protein Sequence (382 amino acids)

>RR42_RS09400 membrane protein (Cupriavidus basilensis FW507-4G11)
MEPLSPNIEAQDTPALAPAGLALRPLAFSVAVFLIVHGISLGVWRLFADPAQAVWKYAPQ
PFGMYLFWGILVLVFVGFNFGMAGFSALKQPVRGCAATVVTLALSFAVPAALVHGYGALD
PAFSAINGAGYGAAGLIVLIGFYGFGILATGMAGWPWSDSGLRPAASGLAQIAAGCCLTG
LGYFLLIYPSVSATTAPHAILLPLPVAIGWFYSVIVAWLTTFLIFDNWPWNRLARKSHMA
LAALAGNFLLGTALYAVHLALLRWVLIPPGAVEKIGAMLPSWPAQLGVCIAFWLIFWANV
AGNWPTRFGAGTNRAIRAASCWGLGVISFFAYTRWFAGTVLHEAQIIPGFGGDPLTWVDL
LNYVMLIYAVYFEFYGLSKRNG