Protein Info for RR42_RS09200 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 79 to 103 (25 residues), see Phobius details amino acids 126 to 127 (2 residues), see Phobius details amino acids 131 to 149 (19 residues), see Phobius details amino acids 161 to 184 (24 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 226 to 247 (22 residues), see Phobius details amino acids 262 to 284 (23 residues), see Phobius details amino acids 295 to 313 (19 residues), see Phobius details amino acids 324 to 345 (22 residues), see Phobius details amino acids 365 to 384 (20 residues), see Phobius details amino acids 404 to 424 (21 residues), see Phobius details amino acids 436 to 459 (24 residues), see Phobius details amino acids 493 to 514 (22 residues), see Phobius details PF00115: COX1" amino acids 80 to 492 (413 residues), 279.3 bits, see alignment E=2.9e-87

Best Hits

KEGG orthology group: K00404, cb-type cytochrome c oxidase subunit I [EC: 1.9.3.1] (inferred from 86% identity to rme:Rmet_4322)

Predicted SEED Role

"Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)" in subsystem Terminal cytochrome C oxidases (EC 1.9.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.9.3.1

Use Curated BLAST to search for 1.9.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y8D3 at UniProt or InterPro

Protein Sequence (533 amino acids)

>RR42_RS09200 membrane protein (Cupriavidus basilensis FW507-4G11)
MSTIAILLSAFLLSVVALAAFIWSMQKGLFDTSPAAANVIFERGEAGQPEDPAADKPHGT
AGDAAYDTSRDIADESSAPVVFLFICCAMVWLVVASLAGLTASVKLHEPDLLASVPWLSF
GRIRTIHLNAVAYGWAPMAGLSIALFLLPRLLKTRLAGAKYAVLGAALWNAGLIAGLGSI
AAGISDGLEWLEIPWQVDILLVAGGALVGMPLVLTLVNRKVDHLYVSVWYMGCALFWFPV
LFLVANIPGLHFGVEQATMNWWFGHNVLGLFYTPLALASIYYFLPKIIGQPVRSYGLSLL
GFWALAFFYGQVGGHHLIGGPVPGWLITLSIVQSMMMLVPVIAFSINQHQTMRGHFHRLI
DSPTLRFVTFGGMMYTLSSAQGSFEALRAVNRVTHFTHYTVAHAHLGLYGFVSFAFFGAI
YFMVPRVTGREWPYRWLIYAHFWLAVAGIGVYFIGLSIGGTLQGYAMLDASKPFMDSVAV
TIPYLKARSVGGGMMLLGHLCFVANFVCAILGLGPNRDRPALFHQGRKRALGA