Protein Info for RR42_RS09080 in Cupriavidus basilensis FW507-4G11

Annotation: C4-dicarboxylate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 6 to 39 (34 residues), see Phobius details amino acids 51 to 74 (24 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 142 to 166 (25 residues), see Phobius details amino acids 172 to 199 (28 residues), see Phobius details amino acids 220 to 241 (22 residues), see Phobius details amino acids 247 to 266 (20 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details amino acids 338 to 385 (48 residues), see Phobius details amino acids 398 to 426 (29 residues), see Phobius details PF06808: DctM" amino acids 11 to 422 (412 residues), 271.3 bits, see alignment E=7.2e-85 TIGR00786: TRAP transporter, DctM subunit" amino acids 21 to 427 (407 residues), 342.8 bits, see alignment E=1.2e-106

Best Hits

KEGG orthology group: None (inferred from 93% identity to rme:Rmet_1876)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YAE4 at UniProt or InterPro

Protein Sequence (436 amino acids)

>RR42_RS09080 C4-dicarboxylate ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MSTVLVSLILLVVMIGFLVIGAWIPVAIAVTSWVGLVVFADRDALVNLANAWWSSSASYT
LASLPLFVWMGEILFRTKLSEQMFNGLSPWLNWLPGRLMHVNILGCGIFGSVSGSSAATC
ATIAKSALPELTRRGYDERVTLGSLSCAGTLGILIPPSITMVVYAVSADVSIIRVFLAGF
LPGLLLMLLFSGYIVVWALSNPDKTPKAEAFNWRSRLASIRQLMPCIVLIAFITWIMITG
YSTATEAAAYGVVASLALAWVGGSLTRKAFWESLMSATRLTAMIMFVLGATSFLSVTMSF
TGIPRALAEWVASMHLSPWALIAVLTVIYILLGTALDGISMIALTTATVLPMVQAAGFDL
VWFGIFIVLLVEIAEVTPPVGFNLFVLQSMTGKDSNYIARVSLPFFMMMVVAIGIVTVWP
QIVTWLPDVVMQKELK