Protein Info for RR42_RS08830 in Cupriavidus basilensis FW507-4G11

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 19 to 43 (25 residues), see Phobius details amino acids 56 to 74 (19 residues), see Phobius details amino acids 84 to 104 (21 residues), see Phobius details amino acids 110 to 132 (23 residues), see Phobius details amino acids 144 to 168 (25 residues), see Phobius details amino acids 176 to 194 (19 residues), see Phobius details amino acids 224 to 243 (20 residues), see Phobius details amino acids 253 to 274 (22 residues), see Phobius details amino acids 286 to 305 (20 residues), see Phobius details amino acids 319 to 342 (24 residues), see Phobius details amino acids 358 to 383 (26 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 377 (351 residues), 139.4 bits, see alignment E=7.1e-45

Best Hits

KEGG orthology group: K02575, MFS transporter, NNP family, nitrate/nitrite transporter (inferred from 82% identity to cti:RALTA_B2040)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YEF5 at UniProt or InterPro

Protein Sequence (415 amino acids)

>RR42_RS08830 MFS transporter (Cupriavidus basilensis FW507-4G11)
MAMATQPLTHEPVPPRAYAVLASSTFAFTICFAIWMMFAVLGIPIKQQLGLSETQFGLLA
ATPVLSGALVRLPLGIWTDRYGGRIVFFALMLVTVIPIWMISHATTLPQLLILGLFVGLA
GGSFSVGTPYVARWFPRSRQGLAMGIFGAGNSGSALTKFVAPALIVAAGGSWTVVPRVYA
IAMLVTAVLFWVCSSSDPAHRATSSASLRAQLAMLRDPRVWRYSQYYSVVFGGYVGLSLW
MTKYYIGEYGFDIKIAALLAACFSLPGGVLRAIGGWISDRYGAHRTTWWVMWVCWVAFFL
LSYPQTDFIIHTARGPQAFHIGLSALPFTALLFIVGVAMAVGKASVFKFIANDFGHNLGA
VSGVVGLAGGLGGFILPVLFGLLADLTGVRSSCFMLLYGTVCVSLVWMHYSQRAK