Protein Info for RR42_RS08575 in Cupriavidus basilensis FW507-4G11

Annotation: tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 transmembrane" amino acids 162 to 175 (14 residues), see Phobius details TIGR01634: phage tail protein I" amino acids 7 to 145 (139 residues), 165.3 bits, see alignment E=3.7e-53 PF09684: Tail_P2_I" amino acids 7 to 148 (142 residues), 160.8 bits, see alignment E=9.5e-52

Best Hits

KEGG orthology group: None (inferred from 66% identity to cti:RALTA_A0916)

Predicted SEED Role

"Phage tail fibers"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YA51 at UniProt or InterPro

Protein Sequence (182 amino acids)

>RR42_RS08575 tail protein (Cupriavidus basilensis FW507-4G11)
MADRSLLPPNASPLERRLTEIMGRLGDIPSPLRELMQPDICPIELLPWLAWHLGVDAWKD
YWPEEVKRARVKAAIPIARQNGTAAAVRGVIAAFGADIALREWWQLTPPGPPHTFDVVLT
VNSRNGEPVTADFVADVIGEIDRTKPVRSHYTFTQRMNSRGAVAIGAALRVALYYRLSIT
ES