Protein Info for RR42_RS07945 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 241 to 264 (24 residues), see Phobius details amino acids 283 to 305 (23 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 3 to 75 (73 residues), 27.7 bits, see alignment E=2.7e-10 PF00528: BPD_transp_1" amino acids 112 to 314 (203 residues), 129.9 bits, see alignment E=9.6e-42

Best Hits

Swiss-Prot: 37% identical to GSIC_SALCH: Glutathione transport system permease protein GsiC (gsiC) from Salmonella choleraesuis (strain SC-B67)

KEGG orthology group: None (inferred from 92% identity to rme:Rmet_1933)

MetaCyc: 36% identical to glutathione ABC transporter membrane subunit GsiC (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YE05 at UniProt or InterPro

Protein Sequence (316 amino acids)

>RR42_RS07945 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MLYLLRRIVYAIPILLGVALLCFSLVHIAPGDPLVSVLPPDASEDLRRQLTALYGFDKPF
VEQFLHWLTRALHGDLGTSIATNRPVMSEVMTAVINSVRLAAVATLIGFTFGCLFGFVAG
YFRDSAADRTASFLSVFGVSMPHYWLGMVLVIVFSVFLGWLPATGAGPGGSSDWAWNWEH
IQYMVLPAVTMSVIPMGIVARTIRALVAEILSNEFIVGLKARGLSELAVFRHVLKNVAPT
ALSVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDFPLLQGTILVLAVFFVLLNL
LVDALQTLFDPRIQRN