Protein Info for RR42_RS06580 in Cupriavidus basilensis FW507-4G11

Annotation: aminoacrylate peracid reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 PF01042: Ribonuc_L-PSP" amino acids 13 to 118 (106 residues), 77.5 bits, see alignment E=4.5e-26

Best Hits

Swiss-Prot: 46% identical to Y322_HAEDU: RutC family protein HD_0322 (HD_0322) from Haemophilus ducreyi (strain 35000HP / ATCC 700724)

KEGG orthology group: None (inferred from 88% identity to reh:H16_A1336)

Predicted SEED Role

"RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y767 at UniProt or InterPro

Protein Sequence (120 amino acids)

>RR42_RS06580 aminoacrylate peracid reductase (Cupriavidus basilensis FW507-4G11)
MSANELKRAHVGKRLSEYAIYNGVVYLAGQVPEVDPGADLRGQTGEVLGHIERLLNEAGS
DKSRILSCQIFLTDVDQIGIMNEVWDAWVVQGHTPPRATVEARLANPQYLIEVVVTAALK