Protein Info for RR42_RS06230 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family" amino acids 7 to 203 (197 residues), 187.4 bits, see alignment E=9e-60 PF01300: Sua5_yciO_yrdC" amino acids 23 to 198 (176 residues), 157.7 bits, see alignment E=1.2e-50

Best Hits

Swiss-Prot: 55% identical to YCIO_ECOLI: Uncharacterized protein YciO (yciO) from Escherichia coli (strain K12)

KEGG orthology group: K07566, putative translation factor (inferred from 88% identity to reh:H16_A1201)

Predicted SEED Role

"Hypothetical YciO protein, TsaC/YrdC paralog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y133 at UniProt or InterPro

Protein Sequence (207 amino acids)

>RR42_RS06230 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MSQYFDIHPLNPQSRLIKQAAQIIGQGGLIALPTDSSYALACRLDDKAAVERLRRLRGID
DKHHLTLMCSDLSELGNFARVDNRQYRWLKGATPGPYVFILEATKEVPRRLSHPARKTIG
VRVPDHPIPLALLAEVGEPLISATLQLPGDEAPLNEPEVIRARLEKLLELVICGGAAPAQ
PTTVIDLTAGEPELVRQGRGDIERFGL