Protein Info for RR42_RS05275 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 88 to 111 (24 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 152 to 172 (21 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 228 to 246 (19 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details PF06181: Urate_ox_N" amino acids 4 to 299 (296 residues), 456.4 bits, see alignment E=2.4e-141

Best Hits

KEGG orthology group: None (inferred from 90% identity to reh:H16_A1010)

Predicted SEED Role

"conserved hypothetical membrane protein, paralogue of Y20848"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y6D5 at UniProt or InterPro

Protein Sequence (401 amino acids)

>RR42_RS05275 membrane protein (Cupriavidus basilensis FW507-4G11)
MEGYILDWANLLLRWVHVITAIAWIGSSFYFVWLDNSLTRPDDPDLQEKGVGGELWAVHG
GGFYNPQKYLSAPKTLPENLHWFYWESYSTWMTGFGLLVVLYLFNASTFLIDKNVMDMSP
GAAIGFALSYLGVGWLVYDCICRVFGKSDRTVGILVAIYVALAAFVACHVFSGRAAFLLT
GAMIATIMSANVLVWIIPGQRKVVAALRAGDPVDPVHGKNAKQRSVHNTYFTLPVLFAML
SNHYSMTYSYKYNWAVLVLIMLAGVLIRQFFILKHKGRINVAWPAAGVAVLAVVAVMIAP
VPREVVASKDGAAAAQVSFIQVQEVINSRCIQCHAAAPKLMPSAAKGIKLDTADEIKAHA
QMIYQQAVQQKAMPLGNVTQITDDERALLGQWFEAGAKTTN