Protein Info for RR42_RS04715 in Cupriavidus basilensis FW507-4G11

Annotation: ribosome silencing factor RsfS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 TIGR00090: ribosome silencing factor" amino acids 8 to 104 (97 residues), 111.7 bits, see alignment E=8.1e-37 PF02410: RsfS" amino acids 9 to 104 (96 residues), 106.4 bits, see alignment E=3.6e-35

Best Hits

KEGG orthology group: K09710, ribosome-associated protein (inferred from 78% identity to cti:RALTA_A0855)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YCI8 at UniProt or InterPro

Protein Sequence (252 amino acids)

>RR42_RS04715 ribosome silencing factor RsfS (Cupriavidus basilensis FW507-4G11)
MDIRKLQRAIVDGLEDVKAQDIKVYDTTHLTELFDRVVIASGSSNRQTKALAASVRDTVK
EAGGHIVAVEGLETGEWVLVDCGDAVVHIMQPQLRMYYNLEELWGDKPVRLKLSTAKKGL
AKASEPIDGEDEDDAPVVRTARRATGLRPALARLPEGMKEPSPPLGHEDTDPDAIATNRA
PTVQKRLTSALGSAPARKAPAKTAAPRKTAAGTGVARKTATKTAATKTAAKAPAKTAAAK
APVARKRATRSA