Protein Info for RR42_RS04675 in Cupriavidus basilensis FW507-4G11

Annotation: alkylhydroperoxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 TIGR01926: uncharacterized peroxidase-related enzyme" amino acids 8 to 184 (177 residues), 232.1 bits, see alignment E=3.7e-73 PF02627: CMD" amino acids 47 to 97 (51 residues), 40.4 bits, see alignment E=1.2e-14 TIGR00778: alkylhydroperoxidase AhpD family core domain" amino acids 65 to 113 (49 residues), 45.6 bits, see alignment E=3.8e-16

Best Hits

KEGG orthology group: None (inferred from 89% identity to reh:H16_A0906)

Predicted SEED Role

"FIG00975192: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y629 at UniProt or InterPro

Protein Sequence (195 amino acids)

>RR42_RS04675 alkylhydroperoxidase (Cupriavidus basilensis FW507-4G11)
MTASPPLSRYPVPAIADLPEDIRARILEVQDKAGFVPNVFLTLAHRPDEFRAFFAYHDAL
MLKEGGLSKGEREMIVVATSGANQCLYCVVAHGAILRIYEKKPTLADQVAVNYRKADITP
RQRAMLDFALKVCEASAEVGDADFAALATHGFSHEDAWDIAAITAFFGLSNRMANTISMR
PNEEFYLMGRVPKAK