Protein Info for RR42_RS04665 in Cupriavidus basilensis FW507-4G11

Annotation: cell shape-determining protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 15 to 45 (31 residues), see Phobius details amino acids 57 to 79 (23 residues), see Phobius details amino acids 91 to 107 (17 residues), see Phobius details amino acids 113 to 134 (22 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details amino acids 170 to 187 (18 residues), see Phobius details amino acids 193 to 210 (18 residues), see Phobius details amino acids 217 to 235 (19 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details amino acids 388 to 406 (19 residues), see Phobius details PF04932: Wzy_C" amino acids 179 to 333 (155 residues), 84.3 bits, see alignment E=3.8e-28

Best Hits

KEGG orthology group: None (inferred from 54% identity to rme:Rmet_2712)

Predicted SEED Role

"Lipid A core - O-antigen ligase and related enzymes"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YCI0 at UniProt or InterPro

Protein Sequence (417 amino acids)

>RR42_RS04665 cell shape-determining protein (Cupriavidus basilensis FW507-4G11)
MMFRAGKVTALTNALVLAFPILLLCVPKGAGIFLGAILLLALIVRRGLRPMFAQYRATLY
PIGLAILALVLVFLGSKLYFHVPWNVMDNPSRILLLLVTCLVILKIAPDPRRLWSGITIA
LAMSLAIVLFQRWVLDDPRPSAWTQAIAFGNMVAALGLIGFVRPGISRKAHLLAWLDLAL
AGSVLIVNGTRGAWLALCITMIPLLFVRYPSMRPAKFFGAVALIAALAAGLYLAPGSPVA
QRVDLVRGQWGQFQQGNTETSVGARLKLWQMAAESIHLHPWLGVGVGQFARIPQASIFCK
EHGSSDVCTLEHAHNDVLEAAATMGMPGMLALLGLFLVPGVLFWRLLRVCWRNANSLGIS
VCASGIGVVMASLISGLTQVTMAHQANIVFYAGIIGLLLGLAAVQAKYPRADGVEKT