Protein Info for RR42_RS04505 in Cupriavidus basilensis FW507-4G11

Annotation: N-acetylglucosaminyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13432: TPR_16" amino acids 46 to 90 (45 residues), 22.7 bits, see alignment 4.6e-08 amino acids 185 to 234 (50 residues), 29.5 bits, see alignment 3.5e-10 PF13176: TPR_7" amino acids 73 to 105 (33 residues), 21.9 bits, see alignment (E = 5.4e-08) PF18073: Rubredoxin_2" amino acids 378 to 402 (25 residues), 33.9 bits, see alignment (E = 7.8e-12)

Best Hits

KEGG orthology group: None (inferred from 80% identity to reu:Reut_A2566)

Predicted SEED Role

"Heat shock (predicted periplasmic) protein YciM, precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y0C8 at UniProt or InterPro

Protein Sequence (412 amino acids)

>RR42_RS04505 N-acetylglucosaminyl transferase (Cupriavidus basilensis FW507-4G11)
MIFETWWLLALPLIFGLGWMAARFDARQLMSEQGALPRSYFKGLNFLLNEQPDQAIDAFI
EVVRLDPETTELHFALGALFRRRGETERAIRVHQNLASRQDLPDAEREHALYELGQDFLR
AGLLDRAEESLRRLMSGPYAAPAKHVLLELYEVEKEWKKAIDAARELQPLEQKDYSVQIA
QFCCELAQDALQRKQPDDAIGWLQQAARENPANVRAPMLLGDVAMAAGDAQGALGHWLGI
EKQDATYLPLVADRVVKAYRQLGDDGRALEWLRGLLKTNLAAELLDSAYRAELEQHGAHA
AAVLMREQLRRQPSLQALTKYFEAQAAEVAQASVAVTANAADVADGEPAGCAHDVEHEQE
VSAIRDLLQHRTRNLARYTCRECGFRARLFYWQCPGCNRWETYAPRRSEALG