Protein Info for RR42_RS04260 in Cupriavidus basilensis FW507-4G11

Annotation: chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 722 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 52 to 71 (20 residues), see Phobius details amino acids 340 to 364 (25 residues), see Phobius details PF13675: PilJ" amino acids 74 to 179 (106 residues), 70.6 bits, see alignment E=1.2e-23 amino acids 203 to 299 (97 residues), 26.9 bits, see alignment E=4.2e-10 PF00015: MCPsignal" amino acids 504 to 688 (185 residues), 132.7 bits, see alignment E=1.3e-42

Best Hits

KEGG orthology group: K02660, twitching motility protein PilJ (inferred from 88% identity to reh:H16_A0739)

Predicted SEED Role

"twitching motility protein PilJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y5W8 at UniProt or InterPro

Protein Sequence (722 amino acids)

>RR42_RS04260 chemotaxis protein (Cupriavidus basilensis FW507-4G11)
MGFKMFSLGRQAPAAGAAELAADAAAAPSTRSTPAETLSGRLSRIPFASQQRALTTGVVV
SLAALLASVYFDNREANNGAAQIEIAGDMLMHSQRLAKAVPVALLGNAQAFTQLRQSKSE
LADDLQALQNGSDAKHVRATGAAAAPLLEKAMESWQRTEKSAGDVLAQQPTLTTIGQTLQ
IFNASNPELLESAEQVAAIKLQSGANAREVAASAQLVMLTQRLGKNLNEFLAGEGVNPET
AFLLGKDTNTFRETLDGLMNGSEALRLSAAGDAETRGYLQQLSQRFDAVQKTTQTILQNL
PGLIAAKRAQQQIFNDNEALRGELSALQAAYAQGARMRPLTLGATIVSALLTLLFLAGLA
ALYLRDSRARTLEAEAREREAEARRLDEKRNNDVTQKAILQLMNELQDIADGDLTKQATV
TEDITGAIADSVNYTVEELRELVGRVQQTAGEVTQASGQVQDTSTELVAASEEQSRQIRQ
TGESVVEMADRITQVSRGAAESANVARASLAAAEQGQHAVQNAIVGMNGIREQIQDTSKR
IKRLGESSQEIGEIVELISDITEQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERS
GEATKQIGALIRTIQTDTQDAVHAMERSTQGVVEGAKLSDNAGAALVEIGRVSRQLAELI
EQISQTTSHEAGLATAVARNIEGILQVTEQTSSGTRQTALSVRQLTLLTEELRNSVLRFK
IA