Protein Info for RR42_RS03965 in Cupriavidus basilensis FW507-4G11

Annotation: DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 PF12728: HTH_17" amino acids 12 to 62 (51 residues), 47.1 bits, see alignment E=1.1e-16 TIGR01764: DNA binding domain, excisionase family" amino acids 12 to 60 (49 residues), 61.6 bits, see alignment E=3.5e-21

Best Hits

KEGG orthology group: None (inferred from 89% identity to cti:RALTA_A0647)

Predicted SEED Role

"FIG00974761: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (200 amino acids)

>RR42_RS03965 DNA-binding protein (Cupriavidus basilensis FW507-4G11)
MKLDSELAEKPYYSTRTAAKLLNVSLGTVQKMVERGELGAWKTNGGHRRIHKETVHRLLA
TRVGQELPSVHELDLVVFHPNHQEAQRIHAQLGKWGLPLKSVVVEDVVDTIITSVSSHPR
VVLYYVEELTDAESATIEKLQNFFARQNVIFAVITNRQAYDGVADALQQWGIMVFLKTPS
LEEVKGFLRAQLMMTRGAAG