Protein Info for RR42_RS03785 in Cupriavidus basilensis FW507-4G11

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 49 (17 residues), see Phobius details amino acids 58 to 98 (41 residues), see Phobius details amino acids 111 to 137 (27 residues), see Phobius details amino acids 146 to 174 (29 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 204 to 227 (24 residues), see Phobius details amino acids 247 to 269 (23 residues), see Phobius details amino acids 304 to 321 (18 residues), see Phobius details amino acids 327 to 344 (18 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details amino acids 397 to 430 (34 residues), see Phobius details amino acids 441 to 462 (22 residues), see Phobius details amino acids 482 to 504 (23 residues), see Phobius details PF00939: Na_sulph_symp" amino acids 30 to 508 (479 residues), 459.2 bits, see alignment E=1.9e-141 TIGR00785: transporter, divalent anion:Na+ symporter (DASS) family" amino acids 47 to 502 (456 residues), 225.3 bits, see alignment E=6.1e-71 PF03600: CitMHS" amino acids 67 to 449 (383 residues), 93.4 bits, see alignment E=1.6e-30

Best Hits

Swiss-Prot: 85% identical to MEMP_CUPNH: Membrane protein (H16_A0667) from Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)

KEGG orthology group: None (inferred from 85% identity to reh:H16_A0667)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YC50 at UniProt or InterPro

Protein Sequence (508 amino acids)

>RR42_RS03785 membrane protein (Cupriavidus basilensis FW507-4G11)
MTDPRTPTQAAPAAIGVAAAAQAAPGKSTPWGLYAAVLVLIGILALPLPPDLPVAGHRML
AILAFAIVVWITEAVSYEASAIMITALMAALIGFAPTVADPATQYGTSRALGMALAGFSN
TALALVAAALFISAAMTVTGLDRRIALVTLSAIGTSTRRILIGSIAVTIALSLVVPSATA
RSACVVPIMMGVIAAFGVDKKSNIAAGIMITVAMATSIWNVGIQTAAAQNLLTVGFMDKL
LGERITWLQWLIAGAPWAIVMSVVLYFLVRFLLPAETEAIPGGKEAVQKELAGLGPMSGP
QKRLAAVSIGLLLFWATEGKLHQFDTATVTFVGLVILMMPRIGVMDWKTMQQRTPWGTLI
VFGVGISLGTALLTTQAGQWLGKFVVANSGLATQGPILVFAILAAFLILIHLGFASATAL
TAALLPILISVLQTLPGNIHQIGLTMLLGFTVSFGFILPINAPQNMVCLGTDTFNGKQFA
KVGIPVTVIGYALMLLFAATYWRWLGWI