Protein Info for RR42_RS03755 in Cupriavidus basilensis FW507-4G11

Annotation: formate dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 transmembrane" amino acids 201 to 220 (20 residues), see Phobius details amino acids 229 to 246 (18 residues), see Phobius details PF01512: Complex1_51K" amino acids 145 to 316 (172 residues), 158 bits, see alignment E=1.8e-50 PF10589: NADH_4Fe-4S" amino acids 428 to 508 (81 residues), 91.3 bits, see alignment E=2.8e-30

Best Hits

KEGG orthology group: K00124, formate dehydrogenase, beta subunit [EC: 1.2.1.2] (inferred from 84% identity to cti:RALTA_A0598)

Predicted SEED Role

"NAD-dependent formate dehydrogenase beta subunit" in subsystem Formate hydrogenase

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.2.1.2

Use Curated BLAST to search for 1.2.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y5F7 at UniProt or InterPro

Protein Sequence (517 amino acids)

>RR42_RS03755 formate dehydrogenase (Cupriavidus basilensis FW507-4G11)
MSITVFVPRDSSALAMGADAVARAIAREAAARGASIELVRNGSRGMFWLEPLVEVQTTAG
RVAYGPVTPEDVAALFDAGFLAGGAHALALGLTEEIPFLKGQERLTFARMGITDPLSLAD
YIAHDGYAGLTRALTLDGAQIVQEVTDSGLRGRGGAAFPTGIKWQTVHQAQSPIKYVVCN
ADEGDSGTFSDRMVMEGDPFMLIEGMTIAGLAVGAEHGYIYVRSEYPHAIAVLESAIGIA
QAAGWLGDDLRGSGRRFRLDVRKGAGAYVCGEETALLESLEGKRGVVRAKPPLPAIEGLF
GKPTIINNVISLATVPVILARGAQFYRDFGMGRSRGTLPFQIAGNVRQGGLVEKAFGVTL
RELLEGYGQGTRSARPIRAVQVGGPLGAYLPVSRLDTPMDYEAFAAFGAVLGHGGIVVFD
DTVDMARQARYAMEFCAIESCGKCTPCRIGSTRGVEVIDKIIAGDQPVKHVKLVRDLCDT
MLGGSLCAMGGMTPYPVLSALDAFPEDFGVAVPAKAA