Protein Info for RR42_RS02760 in Cupriavidus basilensis FW507-4G11

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 48 to 68 (21 residues), see Phobius details amino acids 71 to 94 (24 residues), see Phobius details amino acids 142 to 167 (26 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details amino acids 197 to 213 (17 residues), see Phobius details amino acids 219 to 235 (17 residues), see Phobius details PF03591: AzlC" amino acids 26 to 169 (144 residues), 148.6 bits, see alignment E=7.7e-48

Best Hits

KEGG orthology group: None (inferred from 81% identity to reu:Reut_A0495)

Predicted SEED Role

"Branched-chain amino acid transport protein AzlC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y4V1 at UniProt or InterPro

Protein Sequence (250 amino acids)

>RR42_RS02760 branched-chain amino acid ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MTSGADPTATLTRGGEWWAGVRALAPMLLGVAPFGLIYGVLAVNAGMPAWLACAMSAIVF
GGASQMILTQLWAAGTPAVLIAVTVAMVNLRHALYSATMAPALAHLPGRWKALISYLLTD
EAFAAMTRRLSDDDEHKRYRHWFFFGAGFALWASWQVSTLAGVLVGAQIPRDWPLDFFLP
LTFIAIIVPGIKRRSHAAAALAATALAVACYGMPHKLGLMVAALGGIAAGMLLLGKDRRQ
RKPAATEPAA