Protein Info for RR42_RS02755 in Cupriavidus basilensis FW507-4G11

Annotation: branched-chain amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 112 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details amino acids 25 to 26 (2 residues), see Phobius details transmembrane" amino acids 18 to 24 (7 residues), see Phobius details amino acids 36 to 58 (23 residues), see Phobius details amino acids 66 to 84 (19 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details PF05437: AzlD" amino acids 7 to 103 (97 residues), 93.7 bits, see alignment E=3.2e-31

Best Hits

KEGG orthology group: None (inferred from 85% identity to rme:Rmet_6416)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y749 at UniProt or InterPro

Protein Sequence (112 amino acids)

>RR42_RS02755 branched-chain amino acid transporter (Cupriavidus basilensis FW507-4G11)
MSQLTLLLVFIGAGLATFLIRLSFIAVEGRVRLPSWFRTALQFVPAAMLSALIAPDLLMR
DGHVDIGPGNARLVAGLVAIVIAARTRSIGWTIAGGMGTLIALTYLLNHALK