Protein Info for RR42_RS01640 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 transmembrane" amino acids 27 to 43 (17 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 76 to 94 (19 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details amino acids 182 to 200 (19 residues), see Phobius details amino acids 230 to 252 (23 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details amino acids 288 to 310 (23 residues), see Phobius details amino acids 316 to 335 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 51 to 332 (282 residues), 122.4 bits, see alignment E=9.8e-40

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 93% identity to reh:H16_A0288)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4XZ03 at UniProt or InterPro

Protein Sequence (358 amino acids)

>RR42_RS01640 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MFYRESGQFKTTYVADSQIFPIRQDRIGFAVLMAVAFVAIPLLGSEYWFSAILIPFLIFA
LAALGLNILTGYAGQLSLGTAAFMAVGAYAAYNFQLRIEGLPVLLTFILAGLSAAMVGVA
FGLPSLRIKGFYLAVATLAAQFFVVWALTKFPWFSNNSSSGVITAQQLNLFGIAIDTPVK
KYLFVLMLVTVLAIVAKNLVRSSTGRAWMSVRDMDVAAEVIGIPLMRTKLLAFAVSSFYC
GVAGALYAFCYLGSVEPDGFSLDLSFRVLFMIIIGGVGSILGSFLGAAFILLLPIFLDIA
LPPLAALLHLPFTNAAVSHIQLMVFGGLIIFFLVVEPHGLARMWQIAKEKLRLWPFPH