Protein Info for RR42_RS01635 in Cupriavidus basilensis FW507-4G11

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 34 to 54 (21 residues), see Phobius details amino acids 60 to 79 (20 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 143 to 164 (22 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 227 to 251 (25 residues), see Phobius details amino acids 270 to 290 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 8 to 265 (258 residues), 100.3 bits, see alignment E=5.5e-33

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 96% identity to reu:Reut_A0262)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4YB15 at UniProt or InterPro

Protein Sequence (304 amino acids)

>RR42_RS01635 ABC transporter permease (Cupriavidus basilensis FW507-4G11)
MTFFFEILIGGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMDKGLPM
WAAVIGAFGVMVVVGISTERLVLRKLVNQPPITLFMATIGLSFFLEGLGPLLFGNEVRPI
NLGIVDEPIEAILTRFNIVVSRFDLAAAGIAGILVGTLALFFQYTKVGRALRAVADDHQA
ALSLGIPLQHIWAIVWGVAGFVALVAGMLWGSRNGVQFALTLTALKALPVLILGGFTSVP
GAIVGGLIIGASEKLAEIYIPPVFQSAFGGNFGGIEGWFPYVFALLFLLVRPEGLFGEKH
IDRV