Protein Info for RR42_RS01630 in Cupriavidus basilensis FW507-4G11

Annotation: branched-chain amino acid ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 PF00005: ABC_tran" amino acids 72 to 233 (162 residues), 111.1 bits, see alignment E=6.8e-36 PF12399: BCA_ABC_TP_C" amino acids 282 to 307 (26 residues), 40.2 bits, see alignment (E = 2.1e-14)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 91% identity to reu:Reut_A0261)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y4B3 at UniProt or InterPro

Protein Sequence (307 amino acids)

>RR42_RS01630 branched-chain amino acid ABC transporter ATP-binding protein (Cupriavidus basilensis FW507-4G11)
MSRGERMTQMAWQGVGRGGDGQPAWSGASAGAGATAQALGGVQMEHAQVRQAGDVILDLQ
NISLAFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMLNVINGVYHPQQGRIVFRGEER
RKMHPTAAARQGIARTFQNIALFKGMTVLDNIMTGRNTRFRSGLLANALWWGPARNEEMQ
HRRKVEEVIDFLEIQAIRKTPVGRLPYGLQKRVELARALAAEPSMLLLDEPMAGMNVEEK
QDMCRFILDVNHQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEAVKANPDVIR
AYLGAGH