Protein Info for RR42_RS01480 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 421 TIGR00229: PAS domain S-box protein" amino acids 129 to 249 (121 residues), 63 bits, see alignment E=3e-21 PF00989: PAS" amino acids 144 to 245 (102 residues), 45.6 bits, see alignment E=1.3e-15 PF13426: PAS_9" amino acids 145 to 247 (103 residues), 45.5 bits, see alignment E=1.5e-15 PF08448: PAS_4" amino acids 147 to 249 (103 residues), 43.5 bits, see alignment E=6.9e-15 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 259 to 419 (161 residues), 159.3 bits, see alignment E=7.1e-51 PF00990: GGDEF" amino acids 261 to 415 (155 residues), 144.9 bits, see alignment E=3.8e-46

Best Hits

KEGG orthology group: None (inferred from 55% identity to bpy:Bphyt_1583)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y6J5 at UniProt or InterPro

Protein Sequence (421 amino acids)

>RR42_RS01480 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MAALAAENEELLTFLYMSPASILRIDAAGNVAMANPKAAQVLMPISRTGSLDNLFAVFED
LAPELRSMAATFAHERGYICENHRIFLPTRKQQEPNVLSCSMLRVAQDCTMVVLTDISKV
VAQERSLKQTESWLAAVYSAVNDFAYFSLDATGRIDSWNQSGQRQTGFERQDVEGATLRL
FCHPDSDFTARADEQLRLTRESGWHVEELWCVTRDGRRYWGQLLVAALEEIDGKVSGYSV
VLRDVTERKLSIDKVKELLTRDHLTGAANRGHFFDVGEAEVVRARRLRQPLSVVMLDADH
FKAINDNLGHAAGDHVLKELVACCQGVLRAIDIIARLGGEEFALLLPSTNAHGARATAQR
IRQAVEQHAFHFNGVDIRCTVSLGCATMPGAGDTLDDVLAAADKALYRAKAAGRNCVASQ
D