Protein Info for RR42_RS00540 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 884 PF04174: CP_ATPgrasp_1" amino acids 99 to 407 (309 residues), 297.1 bits, see alignment E=2.3e-92 PF14403: CP_ATPgrasp_2" amino acids 99 to 492 (394 residues), 446.2 bits, see alignment E=1.4e-137 PF04168: Alpha-E" amino acids 544 to 870 (327 residues), 178.4 bits, see alignment E=4.3e-56

Best Hits

KEGG orthology group: None (inferred from 66% identity to reu:Reut_A0068)

Predicted SEED Role

"Protein containing domains DUF404, DUF407, DUF403"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y3Z6 at UniProt or InterPro

Protein Sequence (884 amino acids)

>RR42_RS00540 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MPLQPSLPFDETAPAVDAVMHRARPVPPGHLDELGACGDGLRESWARFFQILGEEGIDGL
DQQAAAMARQIRDNGVTYNVYADNTDKAGARAWALDLLPFLVSEEDWQRIERGVAQRAEL
ANAMVADIYGPQALLSKGLLPAGLVFGHPGYLRPLKGYQPPGGNFLHIVAVDLAHTLEGG
WTVMAHRTDTPSGMGYALENRLIISSLFADAFRELRVRRLPAAFSQLVATLAQQPAAQPP
APESEDNAAATVSKHIVLLTPGPYNETYFEHTFLARYLGITLVEGKDLTVRNDVVYLKTL
AGLERVDVVLRRLDDAYCDPVELRQDSTLGVPGLLQAMRAGNVLVSNAPGSGFLETPAIH
GFLPAISRALLGEELLLPGVPSWWCGEATARAEALGEFTEAFLMPTYPRGMAQPWEGPRL
GMERGLQRLADWRERIEQVPDLFTIQADLPLSHAPRWEGPHIGSRAAMLRVYAIADGQGG
WQVMPGGFTRLAGEGQPAVSMQLGGSSVDTWVLSSQPAQPGGAPSQFPMAGAARGRAAKP
LAVSSRAAENLFWAGRYAERAENNVRLCRLVLGSIESSDDRDDSALDVIGELVLACGLLP
TGAPQPRASLRVFERSLVSALAESTGWTSVGQNLASHVHAATEIRNRLSNDHWRTILAAR
NDFGDAMEAACAGSPGSAGDAGIYDRPRVLAALDHLSMQLAAISGAQGDRMIRDEAWRLL
FIGRHIERVATLSTFLRVFAHNGALLHRTCFDLLLHLFDSTLTFRALYPGRSDVPALVDQ
LVIEPTNPRGLYGLLARLRVKLGQISPPASPAGTGRVPLPQWLPTVETLPDWETLCQRGA
DGKYTNLVRLCEQLTDMMVQLSDEISARYFSHAGMAGTRVGAQP