Protein Info for RR42_RS00245 in Cupriavidus basilensis FW507-4G11

Annotation: microcystin degradation protein MlrC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 493 PF07364: DUF1485" amino acids 2 to 282 (281 residues), 325.8 bits, see alignment E=2.6e-101 PF07171: MlrC_C" amino acids 296 to 477 (182 residues), 172.1 bits, see alignment E=1.4e-54

Best Hits

KEGG orthology group: None (inferred from 80% identity to rpi:Rpic_4902)

Predicted SEED Role

"FIG00977155: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y3T4 at UniProt or InterPro

Protein Sequence (493 amino acids)

>RR42_RS00245 microcystin degradation protein MlrC (Cupriavidus basilensis FW507-4G11)
MKILIARLNHETNTFSPVATPLSSFQPQYGEDAYRASKGTRTAIGAFIDLAEAAGAELVV
PVTASANPSGRVAADAYAALCDAIVSAAPGCDAVMLDLHGAMVAQNSDDGEGELLARLRE
VLPHAPIAVALDLHGNVTQAMIDHADIAVSFKTYPHVDMYETGEHAGRLLMRMLEQKARP
ALAWRRLPMVTHTLRSNTGEGAMQRAVAAARQAEADGMLAVSVLAGFGLADIAAPCLSVL
VVADGGQAAAQAAADKLAAQIWAERAGFVYESEPLAESIARAAQLAAQGGSGPVLLLDHG
DNCMSGGTCDDMQVLREALRQGLSGIAVGPVCDPQAVAAMIEAGVDASVTLPVGNKVPLT
QLGIFPTPLTLTGRVAAISNGEYVISGPTYTGARIRMGRTVLLDIGAARVVVTETPQEHW
DLGIFTHIGVDPLAQRFLLLKSRMYCRPVFVPIAKAVVECDGGGVTSSRYAQFPFARLTR
PVYPLEADVTLGA