Protein Info for RR42_RS00215 in Cupriavidus basilensis FW507-4G11
Annotation: branched-chain amino acid ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01426, amidase [EC: 3.5.1.4] (inferred from 68% identity to har:HEAR3253)Predicted SEED Role
"putative amidase"
MetaCyc Pathways
- superpathway of acrylonitrile degradation (3/3 steps found)
- acrylonitrile degradation I (2/2 steps found)
- indole-3-acetate biosynthesis IV (bacteria) (2/2 steps found)
- L-arginine degradation X (arginine monooxygenase pathway) (2/3 steps found)
- indole-3-acetate biosynthesis III (bacteria) (1/2 steps found)
- indole-3-acetate biosynthesis II (6/12 steps found)
KEGG Metabolic Maps
- Arginine and proline metabolism
- Benzoate degradation via CoA ligation
- Biosynthesis of plant hormones
- Cyanoamino acid metabolism
- Phenylalanine metabolism
- Styrene degradation
- Tryptophan metabolism
- Urea cycle and metabolism of amino groups
Isozymes
Compare fitness of predicted isozymes for: 3.5.1.4
Use Curated BLAST to search for 3.5.1.4
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0C4YAB8 at UniProt or InterPro
Protein Sequence (429 amino acids)
>RR42_RS00215 branched-chain amino acid ABC transporter ATP-binding protein (Cupriavidus basilensis FW507-4G11) MNDFLALPARELAARMARRELSVQALVRAYIARIDAAEAGILAWQHFDGAQALQQARQLD AGPALGALHGLPIGVKDLMDTADMPTTYGSPIYAGHRPVMDAACVAMARAAGAVVMGKTV TTEFATFQPGPTRNPRAPADAPRTPGGSSSGSAAAVAAGMVPIAFGTQTAGSIIRPAAYC GVVGYKPTFGTLPSAGIKSLSPSLDTVGVLARCVDDAAFFIGAMARLPLTPPQAGQATRL RVGICRTPHWERAGDDSRRALDTAARWLEGRGAVLSDLILPAQFDELTQAQIDIMAYEAA AAFAPEMRARPDGFSSGFAALLAAGRGIDGSRFFAAQALAGSARRAFGQMFDSVDIVLAP SAPGEAPAGLGATGDPMFNRMWTLLGNPCVHVPTSTGAHGMPVGVTLIGPCRGDARVLAA AQALERCVA