Protein Info for RR42_RS00030 in Cupriavidus basilensis FW507-4G11

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 762 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF09823: DUF2357" amino acids 94 to 342 (249 residues), 159.6 bits, see alignment E=8.8e-51 PF04411: PDDEXK_7" amino acids 369 to 541 (173 residues), 107.3 bits, see alignment E=8.3e-35

Best Hits

KEGG orthology group: K09124, hypothetical protein (inferred from 68% identity to bam:Bamb_0005)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0C4Y3I5 at UniProt or InterPro

Protein Sequence (762 amino acids)

>RR42_RS00030 hypothetical protein (Cupriavidus basilensis FW507-4G11)
MRTVTEASIPLLAPSGATVAVLHVAVLPHRGSSSPATLWASAGFRDGDEAGGSMELLEGM
EYRYAWERLAPGIGSITADPEEIFQPDTVEGLSGRLRPGLSTGTVRVVLREGPVVLGQQE
IEVRSRKLTYLSEYRWMLRDIAERMTELVMDRFAVSDARFEQDDTRDAVTLYQRFTFLRA
LFESESFQGAIREVLRRPHTAWEVASDIVRPGSGIRADSHVLRQLTKGGQRSAWPGGTIP
SVPSRLERRRTEATHDTTPNRFVKFALEHWSQILGDIDLGLAKGQPTPATTRGRREIAAV
MTQLEEILHHDLFAEVGKMVRFPADDQVLQKCEGYRDIFKAYVELEFAARLSWHDSSQEY
GAGLRDVATLYEYWAFIQLAQVVADLVGQTFDMAPLVQSRKDGLTVGIQSGVETVLKGEV
ERFGRRMVVELCFNRTYRAGSGRVASWTRPMRPDYSLLIGPAEGESAAFEPIVLHFDAKY
RVEFLKEIFGAGDDVEEDAGVQQRPVSLMRGGALRADLLKMHAYRDAIRRTAGAYVLYPG
GDGEEESNQYLEYHELLPGLGAFVLRPTDIGSANGAPALRRFISEVFDHVATRLTMHERG
RYWLEEAYGEPLSGQSAGLLDTPPPETSVLLGFVKSREHWRWIEQRKAYNVRAEGRSGGV
QASADLLHSQLLLLYCPSTQQIALARIVSDAEVISLAGMVAMDYPEPRGEYWCVQLRWLD
QIQWLRGFSPSKIEECATSQGLLYGAPARTSWGVIESACRVG