Protein Info for RALBFv3_RS24570 in Ralstonia solanacearum IBSBF1503

Annotation: 1,4-beta-cellobiosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 558 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF01341: Glyco_hydro_6" amino acids 57 to 409 (353 residues), 333.9 bits, see alignment E=1.5e-103 PF00553: CBM_2" amino acids 484 to 555 (72 residues), 54.8 bits, see alignment E=1e-18

Best Hits

KEGG orthology group: K01225, cellulose 1,4-beta-cellobiosidase [EC: 3.2.1.91] (inferred from 90% identity to rso:RS03897)

Predicted SEED Role

"macromolecule metabolism; macromolecule degradation; degradation of polysaccharides"

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.91

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (558 amino acids)

>RALBFv3_RS24570 1,4-beta-cellobiosidase (Ralstonia solanacearum IBSBF1503)
MISPKKIWKPLEYVVAASLLTGGIFSAPVVHAEAHVDNPFVGATAYVNPDYTKEVNSSIA
KVSNAALKAKMAIVKSYPTSVWLDSIGAIGGGAKNAGRLGLIAHLDAALAQKKTNQPITV
SFVIYDIPGRDCHALASNGELPLTPEGLQRYKKEYIDVIAGIFANPKYKDIRIVNVIEPD
GLPNLVTNLNDSRCAKAKYTGIYEDGIKYALNKFSNIPNVYNYMDIAHSAWLGWDNNRAA
SILLYTQLIQGTTAGFASVNGFATDTANVTPLAEPNLPNPDFNVGGQPIRSSKFYEWNRY
FGEIDFTEALYKDFVAAGWPSNIGFLIDTGRNGWGGTQRPTASTGNDINTYVDSGRIDRR
KHRGNWCNQTGAGIGLPPAAAPGGHLDAVLWIKPPGESDGSSRLIPNNQGKGFDRMCDPN
FTTADGVLTGALPNAPIAGEWFHDQFVMLITNAYPAIGGSTPPSTASSTPTPAPSSNISI
RVIADSEWNAGSCKHVQVTNTASSPSTWSVTLQIKGQVQSLWSANWSQNGDTLTASGLDW
NKTLAPNGVTEFGFCTAY