Protein Info for RALBFv3_RS23075 in Ralstonia solanacearum IBSBF1503

Annotation: nitrite reductase, copper-containing

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details TIGR02376: nitrite reductase, copper-containing" amino acids 50 to 344 (295 residues), 364.4 bits, see alignment E=3e-113 PF07732: Cu-oxidase_3" amino acids 78 to 189 (112 residues), 43.4 bits, see alignment E=8.6e-15 PF07731: Cu-oxidase_2" amino acids 99 to 188 (90 residues), 22.8 bits, see alignment E=1.6e-08 amino acids 215 to 317 (103 residues), 21.1 bits, see alignment E=5.6e-08 PF00127: Copper-bind" amino acids 102 to 186 (85 residues), 23.3 bits, see alignment E=1.8e-08 PF13442: Cytochrome_CBB3" amino acids 383 to 467 (85 residues), 34.7 bits, see alignment E=4.6e-12 PF00034: Cytochrom_C" amino acids 384 to 471 (88 residues), 45.9 bits, see alignment E=3.1e-15

Best Hits

KEGG orthology group: K00368, nitrite reductase (NO-forming) [EC: 1.7.2.1] (inferred from 90% identity to rso:RS03038)

Predicted SEED Role

"Copper-containing nitrite reductase (EC 1.7.2.1)" in subsystem Denitrification (EC 1.7.2.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.7.2.1

Use Curated BLAST to search for 1.7.2.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (499 amino acids)

>RALBFv3_RS23075 nitrite reductase, copper-containing (Ralstonia solanacearum IBSBF1503)
MCCLQAVRRLMRAGLVSVVLGALVAGGMPAGAAAKLPGDLGPPRGEPIRAVLSSPPNVPP
PVNRGYPAKVIVELEVVEKEMPISEGVSYTFWTFGGTVPGSFIRVRQGDTVEFHLKNHPS
SKMPHNIDLHGVIGPGGGAASSFTAPGHESQFTFKALNEGIYVYHCATAPVGMHIANGMY
GLILVEPPEGLPKVDHEYYVMQGDFYTTGKYREKGPQPFDMEKAIDERPTYVLFNGAEGA
LTGDKALHAKTNETVRIFVGNGGPNMVSSFHVIGAIFDQVRYEGGSNVQKNVQTTLIPAG
GAAIVKFTTRVPGSYVLVDHSIFRAFNKGAMAILKVDGPEDKLVYSGKELDSVYLGDRAG
PNLAAVTKAAQASASGTLTVQDQVQAGRALFTGTCSVCHQSGGAGLPGVFPPLAKSDYLA
ADPKRAIGVLLHGLNGKIKVNGQEYDSVMPPMTQLNDDEIANILTYVLNSWDNPGGRISA
DEVKQVRAQPAPAKAVAEH