Protein Info for RALBFv3_RS22980 in Ralstonia solanacearum IBSBF1503

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 19 to 38 (20 residues), see Phobius details amino acids 50 to 74 (25 residues), see Phobius details amino acids 85 to 106 (22 residues), see Phobius details amino acids 112 to 133 (22 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 224 to 245 (22 residues), see Phobius details amino acids 255 to 273 (19 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details amino acids 309 to 335 (27 residues), see Phobius details amino acids 345 to 366 (22 residues), see Phobius details amino acids 372 to 392 (21 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 359 (334 residues), 101.5 bits, see alignment E=2.3e-33 amino acids 224 to 391 (168 residues), 33.5 bits, see alignment E=1.2e-12

Best Hits

KEGG orthology group: None (inferred from 93% identity to rsl:RPSI07_mp0062)

Predicted SEED Role

"4-hydroxybenzoate transporter" in subsystem Cinnamic Acid Degradation or Gentisare degradation or Phenylpropanoid compound degradation or Salicylate and gentisate catabolism or p-Hydroxybenzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>RALBFv3_RS22980 MFS transporter (Ralstonia solanacearum IBSBF1503)
MPAAPTSPAQSATADTQGLIRLLTAGAGVSVACIYLNHPLLGLIGRDLDIAPHALGVLPT
LTAAGYASGIFFFGPLGDRYDRRLVILWKAVLLTLALIGSCVAPGLPMLAASGFAIGLAA
TIAQDFVPSAAAISTDLNRNRNIGTVMTGLLIGIVGSRVFSGIVADHFGWRAAFGVSAAA
IVGLALAVRAAHFGVAPATRQPYFTLLRSLGTLFAQHPRLRASAFTQACLSVAFSGFWST
VALHLTGTLGLSTGQAGLLGLAGAAGALGASIAGRLSGRVAPGHIVTGGALLMAATFAAM
ALFPHSLLAIVIGTLLFDMGVQAALVSHQTIIYALAPEARSRINAVFMTIVFIGMSAGAY
GASLAWSGGRWTGLMAFCTATASIGLGLRLIFNARLGTR