Protein Info for RALBFv3_RS21105 in Ralstonia solanacearum IBSBF1503

Annotation: CusA/CzcA family heavy metal efflux RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1052 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 344 to 364 (21 residues), see Phobius details amino acids 371 to 389 (19 residues), see Phobius details amino acids 399 to 418 (20 residues), see Phobius details amino acids 438 to 463 (26 residues), see Phobius details amino acids 476 to 501 (26 residues), see Phobius details amino acids 558 to 580 (23 residues), see Phobius details amino acids 891 to 910 (20 residues), see Phobius details amino acids 917 to 937 (21 residues), see Phobius details amino acids 947 to 967 (21 residues), see Phobius details amino acids 989 to 1008 (20 residues), see Phobius details amino acids 1020 to 1043 (24 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 1 to 1047 (1047 residues), 1093.9 bits, see alignment E=0 PF00873: ACR_tran" amino acids 8 to 1046 (1039 residues), 944.2 bits, see alignment E=4.2e-288

Best Hits

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1052 amino acids)

>RALBFv3_RS21105 CusA/CzcA family heavy metal efflux RND transporter (Ralstonia solanacearum IBSBF1503)
MIDALVRGALKQRLVVAVVAAVLLFFGVDAARKLSLDAFPDVTNVQVQIATEAPGRSPEE
VERFVTVPVEMAMTGLPALTEMRSLNKPGLSLITLVFTDETDVYFARQLVMERIMEVQSR
MPVGVTPVLGPVSTGLGEVYQYTLDRPDDGSKELSVEELTRRRIAQDWVVRPLLRSIPGV
AEINSQGGYEKQYQVLVNPERLRHHNVTVQQVFEALAANNANSGGGVLPHFAEQYLIRGV
GLVRDINDIGAIVLKEVGGTPLTVRDVAEVKIGTAVRAGAVVKNGVTESVGGVVMMMRGG
NAKEVVARIQERVKAVNDNGMLPDGLKIVPYYERSELVDSALNTVIKVLLEGVVLVVLVL
LLFLGDIRSSLIVVGTLVLTPLLTFMAMNRLGISANLMSLGGLAIAIGLMVDGSVVVVEN
AFAHLAKPRDPNESRVRIILHAVTEVATPVIFGVGIIILVFLPLMTLQGMEGKMFAPLAF
TIAIALFISLVLSLTLTPVLSSYLLKPKASKHAGGDHGDHGHDAHAQHDEHDTWLIRKLK
KPYLRLLELSLNNGRKTVVVAVAVFFATGALMPFLGTAFIPEMKEGSIVPGINRAPNISL
EESIRMEMEAMRLVMQVPGVRSAVSGVGRGESPADPQGQNESTPIVSLKPRDQWPKGWTQ
DDIAEGMRRALQALPGVQIVMAQPISDRVDEMVTGVRSDVAIKVFGDDLAVLREKAEAIA
RVAQGIQGAQDMRVERITGQQYLQIAIDRQAIARHGLNASDVHNVIETAIGGKEATEVFE
GERRFGAVVRLPEAYRGSVEAIRNLIVAAPNGAQVPLESIARIDVTDGPAQISRELGKRR
VVVGVNVRDRDLGGFVAELQAAVAQKVKLPEGYYLEWGGQFQNMERAMGHLKVIVPITVA
AIFFLLFLLFNSVRYATLIILVLPFASVGGIIGLFVTGEYLSVPASVGFVALWGIAVLNG
VVLVSTIRNLREQGMSIDESVRLGARLRFRPVMMTATVAMLGLIPFLFATGPGAEVQRPL
AIVVIGGLLTCTLLTLVMLPTLYKWFDEEARS